IL_5ND8_143
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ND8_143 not in the Motif Atlas
- Geometric match to IL_4LFB_030
- Geometric discrepancy: 0.1465
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
5ND8|1|a|G|681
5ND8|1|a|G|682
5ND8|1|a|A|683
5ND8|1|a|A|684
5ND8|1|a|U|685
5ND8|1|a|U|686
*
5ND8|1|a|A|720
5ND8|1|a|G|721
5ND8|1|a|G|722
5ND8|1|a|A|723
5ND8|1|a|A|724
5ND8|1|a|C|725
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L2
- Chain f
- 30S ribosomal protein S6
- Chain k
- 30S ribosomal protein S11
- Chain r
- 30S ribosomal protein S18
- Chain u
- 30S ribosomal protein S21
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