IL_5ND8_150

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5ND8|1|a|C|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_150 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.2127

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5ND8|1|a|G|943
5ND8|1|a|C|944
5ND8|1|a|A|945
*
5ND8|1|a|U|1391
5ND8|1|a|U|1392
5ND8|1|a|C|1393
5ND8|1|a|C|1394
5ND8|1|a|C|1395

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9

Chain v

Ribosome hibernation promotion factor