IL_5ND8_168

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5ND8|1|a|C|1411, 5ND8|1|a|A|1515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_168 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.2486

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5ND8|1|a|C|1410
5ND8|1|a|C|1411
5ND8|1|a|G|1412
*
5ND8|1|a|C|1513
5ND8|1|a|A|1514
5ND8|1|a|A|1515
5ND8|1|a|G|1516

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain v

Ribosome hibernation promotion factor