IL_5ND8_170

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND8_170 not in the Motif Atlas

Geometric match to IL_4JGN_002

Geometric discrepancy: 0.1395

The information below is about IL_4JGN_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5ND8|1|a|G|1416
5ND8|1|a|U|1417
5ND8|1|a|C|1418
*
5ND8|1|a|G|1506
5ND8|1|a|U|1507
5ND8|1|a|C|1508

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain v

Ribosome hibernation promotion factor