IL_5ND8_189
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAGUACGA*UUGAAAC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ND8_189 not in the Motif Atlas
- Homologous match to IL_6CZR_146
- Geometric discrepancy: 0.1407
- The information below is about IL_6CZR_146
- Detailed Annotation
- 9x7 Sarcin-Ricin with inserted C; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_68633.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5ND8|1|a|G|897
5ND8|1|a|G|898
5ND8|1|a|A|899
5ND8|1|a|G|900
5ND8|1|a|U|901
5ND8|1|a|A|902
5ND8|1|a|C|903
5ND8|1|a|G|904
5ND8|1|a|A|905
*
5ND8|1|a|U|914
5ND8|1|a|U|915
5ND8|1|a|G|916
5ND8|1|a|A|917
5ND8|1|a|A|918
5ND8|1|a|A|919
5ND8|1|a|C|920
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
Coloring options: