IL_5ND9_011
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCAC*GAGUGAAAUAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 5ND9|1|A|U|549, 5ND9|1|A|A|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ND9_011 not in the Motif Atlas
- Geometric match to IL_4WF9_015
- Geometric discrepancy: 0.1406
- The information below is about IL_4WF9_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.1
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 9
Unit IDs
5ND9|1|A|G|527
5ND9|1|A|C|528
5ND9|1|A|A|529
5ND9|1|A|C|530
*
5ND9|1|A|G|541
5ND9|1|A|A|542
5ND9|1|A|G|543
5ND9|1|A|U|544
5ND9|1|A|G|545
5ND9|1|A|A|546
5ND9|1|A|A|547
5ND9|1|A|A|548
5ND9|1|A|U|549
5ND9|1|A|A|550
5ND9|1|A|G|551
5ND9|1|A|A|552
5ND9|1|A|A|553
5ND9|1|A|C|554
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain V
- 50S ribosomal protein L22
- Chain X
- 50S ribosomal protein L24
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