IL_5ND9_019

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUGAAG*UGGAGGA

Length

13 nucleotides

Bulged bases

5ND9|1|A|G|774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND9_019 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.26

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5ND9|1|A|U|747
5ND9|1|A|U|748
5ND9|1|A|G|749
5ND9|1|A|A|750
5ND9|1|A|A|751
5ND9|1|A|G|752
*
5ND9|1|A|U|769
5ND9|1|A|G|770
5ND9|1|A|G|771
5ND9|1|A|A|772
5ND9|1|A|G|773
5ND9|1|A|G|774
5ND9|1|A|A|775

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2