IL_5ND9_043
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGAGUCGC*GUGAAAUC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ND9_043 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.3005
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5ND9|1|A|G|1300
5ND9|1|A|U|1301
5ND9|1|A|G|1302
5ND9|1|A|A|1303
5ND9|1|A|G|1304
5ND9|1|A|U|1305
5ND9|1|A|C|1306
5ND9|1|A|G|1307
5ND9|1|A|C|1308
*
5ND9|1|A|G|2037
5ND9|1|A|U|2038
5ND9|1|A|G|2039
5ND9|1|A|A|2040
5ND9|1|A|A|2041
5ND9|1|A|A|2042
5ND9|1|A|U|2043
5ND9|1|A|C|2044
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain F
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L17
- Chain V
- 50S ribosomal protein L22
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