IL_5ND9_131
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5ND9|1|a|A|540, 5ND9|1|a|U|542, 5ND9|1|a|A|543
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ND9_131 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.4103
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5ND9|1|a|G|523
5ND9|1|a|U|524
5ND9|1|a|G|525
5ND9|1|a|C|526
5ND9|1|a|C|527
5ND9|1|a|A|528
5ND9|1|a|G|529
*
5ND9|1|a|C|536
5ND9|1|a|G|537
5ND9|1|a|G|538
5ND9|1|a|U|539
5ND9|1|a|A|540
5ND9|1|a|A|541
5ND9|1|a|U|542
5ND9|1|a|A|543
5ND9|1|a|C|544
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
- Chain v
- Ribosome hibernation promotion factor
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