IL_5ND9_166

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ND9_166 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.2486

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5ND9|1|a|G|1412
5ND9|1|a|C|1413
5ND9|1|a|C|1414
5ND9|1|a|C|1415
*
5ND9|1|a|G|1509
5ND9|1|a|U|1510
5ND9|1|a|A|1511
5ND9|1|a|A|1512
5ND9|1|a|C|1513

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain v

Ribosome hibernation promotion factor