IL_5NDG_033
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 5NDG|1|1|G|908, 5NDG|1|1|A|920, 5NDG|1|1|A|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDG_033 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.1299
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5NDG|1|1|G|907
5NDG|1|1|G|908
5NDG|1|1|G|909
*
5NDG|1|1|U|919
5NDG|1|1|A|920
5NDG|1|1|A|921
5NDG|1|1|U|922
5NDG|1|1|C|923
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L2
- 60S ribosomal protein L2-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain M7
- 60S ribosomal protein L17-A
- Chain O7
- 60S ribosomal protein L37-A
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