IL_5NDG_069

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

5NDG|1|1|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDG_069 not in the Motif Atlas

Homologous match to IL_5TBW_071

Geometric discrepancy: 0.0998

The information below is about IL_5TBW_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5NDG|1|1|U|1694
5NDG|1|1|U|1695
5NDG|1|1|A|1696
5NDG|1|1|A|1697
5NDG|1|1|C|1698
*
5NDG|1|1|G|1747
5NDG|1|1|G|1748
5NDG|1|1|A|1749
5NDG|1|1|A|1750
5NDG|1|1|G|1751
5NDG|1|1|A|1752

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain O4

60S ribosomal protein L34-A

Chain O8

60S ribosomal protein L38