IL_5NDG_086
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDG_086 not in the Motif Atlas
- Homologous match to IL_5TBW_088
- Geometric discrepancy: 0.0743
- The information below is about IL_5TBW_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5NDG|1|1|U|2211
5NDG|1|1|C|2212
5NDG|1|1|A|2213
5NDG|1|1|A|2214
5NDG|1|1|A|2215
5NDG|1|1|G|2216
5NDG|1|1|U|2217
*
5NDG|1|1|A|2228
5NDG|1|1|A|2229
5NDG|1|1|C|2230
5NDG|1|1|C|2231
5NDG|1|1|A|2232
5NDG|1|1|A|2233
5NDG|1|1|G|2234
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain O6
- 60S ribosomal protein L36-A
- Chain Q2
- 60S ribosomal protein L42-A
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