IL_5NDG_131
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDG_131 not in the Motif Atlas
- Homologous match to IL_5TBW_135
- Geometric discrepancy: 0.1512
- The information below is about IL_5TBW_135
- Detailed Annotation
- Double sheared; A in syn
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
5NDG|1|1|A|3342
5NDG|1|1|G|3343
5NDG|1|1|A|3344
5NDG|1|1|G|3345
*
5NDG|1|1|C|3360
5NDG|1|1|G|3361
5NDG|1|1|A|3362
5NDG|1|1|U|3363
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M9
- 60S ribosomal protein L19-A
- Chain N2
- 60S ribosomal protein L22-A
- Chain S8
- 40S ribosomal protein S8-A
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