IL_5NDG_143

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5NDG|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDG_143 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.2082

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5NDG|1|2|G|143
5NDG|1|2|U|144
5NDG|1|2|A|145
5NDG|1|2|U|146
5NDG|1|2|A|147
5NDG|1|2|A|148
5NDG|1|2|C|149
*
5NDG|1|2|G|165
5NDG|1|2|C|166
5NDG|1|2|U|167
5NDG|1|2|A|168
5NDG|1|2|A|169
5NDG|1|2|U|170
5NDG|1|2|A|171
5NDG|1|2|C|172

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A