IL_5NDG_180
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 5NDG|1|2|C|1096, 5NDG|1|2|U|1098, 5NDG|1|2|G|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDG_180 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1489
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDG|1|2|C|1034
5NDG|1|2|G|1035
5NDG|1|2|A|1036
*
5NDG|1|2|U|1095
5NDG|1|2|C|1096
5NDG|1|2|U|1097
5NDG|1|2|U|1098
5NDG|1|2|U|1099
5NDG|1|2|G|1100
5NDG|1|2|G|1101
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C1
- 40S ribosomal protein S11-A
- Chain C3
- 40S ribosomal protein S13
- Chain D2
- 40S ribosomal protein S22-A
- Chain D3
- 40S ribosomal protein S23-A
- Chain D7
- 40S ribosomal protein S27-A
- Chain S2
- 40S ribosomal protein S2
Coloring options: