IL_5NDG_341
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 5NDG|1|5|A|3142, 5NDG|1|5|C|3143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDG_341 not in the Motif Atlas
- Homologous match to IL_5TBW_114
- Geometric discrepancy: 0.0845
- The information below is about IL_5TBW_114
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
5NDG|1|5|C|3004
5NDG|1|5|A|3005
5NDG|1|5|A|3006
5NDG|1|5|U|3007
*
5NDG|1|5|A|3139
5NDG|1|5|G|3140
5NDG|1|5|A|3141
5NDG|1|5|A|3142
5NDG|1|5|C|3143
5NDG|1|5|G|3144
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l3
- 60S ribosomal protein L3
- Chain m6
- 60S ribosomal protein L16-A
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