IL_5NDG_392
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDG_392 not in the Motif Atlas
- Homologous match to IL_4V88_413
- Geometric discrepancy: 0.1037
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
5NDG|1|6|A|550
5NDG|1|6|G|551
5NDG|1|6|G|552
5NDG|1|6|G|553
5NDG|1|6|C|554
5NDG|1|6|A|555
5NDG|1|6|A|556
5NDG|1|6|G|557
*
5NDG|1|6|C|587
5NDG|1|6|U|588
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain e0
- 40S ribosomal protein S30-A
- Chain s2
- 40S ribosomal protein S2
- Chain s9
- 40S ribosomal protein S9-A
- Chain sM
- Suppressor protein STM1
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