IL_5NDG_404

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

5NDG|1|6|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDG_404 not in the Motif Atlas

Geometric match to IL_1NBS_006

Geometric discrepancy: 0.2787

The information below is about IL_1NBS_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5NDG|1|6|G|868
5NDG|1|6|A|869
5NDG|1|6|C|870
*
5NDG|1|6|G|957
5NDG|1|6|U|958
5NDG|1|6|U|959
5NDG|1|6|U|960

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c3

40S ribosomal protein S13

Chain d7

40S ribosomal protein S27-A