IL_5NDG_467

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CACAC*GCGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDG_467 not in the Motif Atlas

Homologous match to IL_8P9A_349

Geometric discrepancy: 0.2249

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5NDG|1|1|C|3162
5NDG|1|1|A|3163
5NDG|1|1|C|3164
5NDG|1|1|A|3165
5NDG|1|1|C|3166
*
5NDG|1|1|G|3284
5NDG|1|1|C|3285
5NDG|1|1|G|3286
5NDG|1|1|U|3287
5NDG|1|1|G|3288

Current chains

Chain 1

25S ribosomal RNA

Nearby chains