IL_5NDJ_023
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_023 not in the Motif Atlas
- Homologous match to IL_6CZR_135
- Geometric discrepancy: 0.1176
- The information below is about IL_6CZR_135
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
5NDJ|1|13|U|1209
5NDJ|1|13|G|1210
5NDJ|1|13|U|1211
5NDJ|1|13|A|1212
5NDJ|1|13|G|1213
*
5NDJ|1|13|U|1386
5NDJ|1|13|G|1387
5NDJ|1|13|A|1388
5NDJ|1|13|G|1389
5NDJ|1|13|G|1390
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3I
- 30S ribosomal protein S12
- Chain 6I
- 30S ribosomal protein S15
- Chain 7E
- 30S ribosomal protein S8
- Chain 8I
- 30S ribosomal protein S17
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