IL_5NDJ_027
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GA*UGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_027 not in the Motif Atlas
- Geometric match to IL_4LFB_027
- Geometric discrepancy: 0.0755
- The information below is about IL_4LFB_027
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_50694.7
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 27
Unit IDs
5NDJ|1|13|G|1283
5NDJ|1|13|A|1284
*
5NDJ|1|13|U|1380
5NDJ|1|13|G|1381
5NDJ|1|13|A|1382
5NDJ|1|13|C|1383
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 6I
- 30S ribosomal protein S15
- Chain 7E
- 30S ribosomal protein S8
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