IL_5NDJ_035

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

5NDJ|1|13|A|2022

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_035 not in the Motif Atlas

Homologous match to IL_4LFB_035

Geometric discrepancy: 0.1002

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

5NDJ|1|13|G|1545
5NDJ|1|13|A|1546
*
5NDJ|1|13|U|2021
5NDJ|1|13|A|2022
5NDJ|1|13|C|2023

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 4E

30S ribosomal protein S5