IL_5NDJ_050

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

5NDJ|1|13|U|1884, 5NDJ|1|13|A|1907, 5NDJ|1|13|U|1908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_050 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1779

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

5NDJ|1|13|G|1882
5NDJ|1|13|A|1883
5NDJ|1|13|U|1884
5NDJ|1|13|G|1885
*
5NDJ|1|13|C|1904
5NDJ|1|13|U|1905
5NDJ|1|13|A|1906
5NDJ|1|13|A|1907
5NDJ|1|13|U|1908
5NDJ|1|13|C|1909

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1I

30S ribosomal protein S10

Chain 2E

30S ribosomal protein S3

Chain 5I

30S ribosomal protein S14 type Z