IL_5NDJ_053
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CGGAUU*AUGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_053 not in the Motif Atlas
- Homologous match to IL_4LFB_055
- Geometric discrepancy: 0.1274
- The information below is about IL_4LFB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57885.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
5NDJ|1|13|C|1930
5NDJ|1|13|G|1931
5NDJ|1|13|G|1932
5NDJ|1|13|A|1933
5NDJ|1|13|U|1934
5NDJ|1|13|U|1935
*
5NDJ|1|13|A|1956
5NDJ|1|13|U|1957
5NDJ|1|13|G|1958
5NDJ|1|13|A|1959
5NDJ|1|13|A|1960
5NDJ|1|13|G|1961
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1F
- 30S ribosomal protein Thx
- Chain 4I
- 30S ribosomal protein S13
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