IL_5NDJ_100
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 5NDJ|1|14|U|1074, 5NDJ|1|14|A|1175, 5NDJ|1|14|U|1178
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_100 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0908
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5NDJ|1|14|G|1072
5NDJ|1|14|G|1073
5NDJ|1|14|U|1074
5NDJ|1|14|A|1075
5NDJ|1|14|A|1076
5NDJ|1|14|A|1077
5NDJ|1|14|G|1078
*
5NDJ|1|14|C|1172
5NDJ|1|14|G|1173
5NDJ|1|14|A|1174
5NDJ|1|14|A|1175
5NDJ|1|14|A|1176
5NDJ|1|14|A|1177
5NDJ|1|14|U|1178
5NDJ|1|14|G|1179
5NDJ|1|14|A|1180
5NDJ|1|14|U|1181
5NDJ|1|14|C|1183
5NDJ|1|14|G|1184
5NDJ|1|14|G|1185
5NDJ|1|14|G|1186
5NDJ|1|14|G|1187
5NDJ|1|14|C|1188
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L13
- Chain 1J
- 5S ribosomal RNA; 5S rRNA
- Chain 29
- 50S ribosomal protein L3
- Chain 45
- 50S ribosomal protein L16
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