IL_5NDJ_114

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

5NDJ|1|14|A|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_114 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.099

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5NDJ|1|14|C|1486
5NDJ|1|14|U|1487
5NDJ|1|14|A|1488
5NDJ|1|14|G|1489
*
5NDJ|1|14|C|1601
5NDJ|1|14|G|1602
5NDJ|1|14|A|1603
5NDJ|1|14|A|1604
5NDJ|1|14|G|1605

Current chains

Chain 14

23S ribosomal RNA

Nearby chains