IL_5NDJ_118

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

5NDJ|1|14|C|1558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_118 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.3465

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5NDJ|1|14|U|1531
5NDJ|1|14|G|1532
*
5NDJ|1|14|C|1555
5NDJ|1|14|A|1556
5NDJ|1|14|A|1557
5NDJ|1|14|C|1558
5NDJ|1|14|A|1559
5NDJ|1|14|A|1560
5NDJ|1|14|G|1561

Current chains

Chain 14

23S ribosomal RNA

Nearby chains