IL_5NDJ_120

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

5NDJ|1|14|C|1593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_120 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.2877

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5NDJ|1|14|G|1575
5NDJ|1|14|G|1576
5NDJ|1|14|A|1577
5NDJ|1|14|A|1578
5NDJ|1|14|G|1579
*
5NDJ|1|14|U|1590
5NDJ|1|14|G|1591
5NDJ|1|14|A|1592
5NDJ|1|14|C|1593
5NDJ|1|14|A|1594
5NDJ|1|14|A|1595
5NDJ|1|14|C|1596

Current chains

Chain 14

23S ribosomal RNA

Nearby chains