IL_5NDJ_154
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CG*UGG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_154 not in the Motif Atlas
- Homologous match to IL_7RQB_096
- Geometric discrepancy: 0.0841
- The information below is about IL_7RQB_096
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_76223.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
5NDJ|1|14|C|2522
5NDJ|1|14|G|2523
*
5NDJ|1|14|U|2595
5NDJ|1|14|G|2596
5NDJ|1|14|G|2597
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 29
- 50S ribosomal protein L3
- Chain J5
- 50S ribosomal protein L32
- Chain W4
- Transfer RNA; tRNA
Coloring options: