IL_5NDJ_159

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5NDJ|1|14|G|2796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_159 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0874

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5NDJ|1|14|U|2651
5NDJ|1|14|U|2652
5NDJ|1|14|G|2653
5NDJ|1|14|A|2654
5NDJ|1|14|G|2655
*
5NDJ|1|14|C|2790
5NDJ|1|14|A|2791
5NDJ|1|14|A|2792
5NDJ|1|14|G|2793
5NDJ|1|14|A|2794
5NDJ|1|14|U|2795
5NDJ|1|14|G|2796
5NDJ|1|14|A|2797
5NDJ|1|14|G|2798

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 29

50S ribosomal protein L3