IL_5NDJ_161

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_161 not in the Motif Atlas

Homologous match to IL_7RQB_104

Geometric discrepancy: 0.0853

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

5NDJ|1|14|C|2695
5NDJ|1|14|C|2696
5NDJ|1|14|U|2697
5NDJ|1|14|C|2698
5NDJ|1|14|U|2699
*
5NDJ|1|14|A|2741
5NDJ|1|14|U|2742
5NDJ|1|14|G|2743

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L14

Chain 29

50S ribosomal protein L3

Chain 55

50S ribosomal protein L17

Chain 75

50S ribosomal protein L19