IL_5NDJ_162

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

5NDJ|1|14|U|2704, 5NDJ|1|14|C|2705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_162 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.0888

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

5NDJ|1|14|U|2702
5NDJ|1|14|U|2703
5NDJ|1|14|U|2704
5NDJ|1|14|C|2705
5NDJ|1|14|C|2706
*
5NDJ|1|14|G|2734
5NDJ|1|14|G|2735
5NDJ|1|14|U|2736
5NDJ|1|14|A|2737
5NDJ|1|14|G|2738

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain 55

50S ribosomal protein L17

Chain 75

50S ribosomal protein L19