IL_5NDJ_176

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

5NDJ|1|1G|C|694, 5NDJ|1|1G|A|697

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_176 not in the Motif Atlas

Homologous match to IL_4LFB_003

Geometric discrepancy: 0.071

The information below is about IL_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

5NDJ|1|1G|C|693
5NDJ|1|1G|C|694
5NDJ|1|1G|U|695
5NDJ|1|1G|A|696
5NDJ|1|1G|A|697
5NDJ|1|1G|G|698
*
5NDJ|1|1G|U|1000
5NDJ|1|1G|A|1001
5NDJ|1|1G|G|1002

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 3A

30S ribosomal protein S12