IL_5NDJ_192

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_192 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.0917

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5NDJ|1|1G|G|1090
5NDJ|1|1G|A|1091
5NDJ|1|1G|A|1092
5NDJ|1|1G|A|1093
5NDJ|1|1G|C|1094
5NDJ|1|1G|C|1095
*
5NDJ|1|1G|G|1107
5NDJ|1|1G|A|1108
5NDJ|1|1G|C|1109
5NDJ|1|1G|U|1110
5NDJ|1|1G|G|1111
5NDJ|1|1G|A|1112
5NDJ|1|1G|C|1113

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 7A

30S ribosomal protein S16