IL_5NDJ_222

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5NDJ|1|1G|C|2028, 5NDJ|1|1G|A|2126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_222 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.0763

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5NDJ|1|1G|C|2027
5NDJ|1|1G|C|2028
5NDJ|1|1G|G|2029
*
5NDJ|1|1G|C|2124
5NDJ|1|1G|A|2125
5NDJ|1|1G|A|2126
5NDJ|1|1G|G|2127

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain X4

Transfer RNA; tRNA

Chain Y4

mRNA