IL_5NDJ_231

3D structure

PDB id

5NDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDJ_231 not in the Motif Atlas

Geometric match to IL_5J7L_269

Geometric discrepancy: 0.2375

The information below is about IL_5J7L_269

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

5NDJ|1|1G|C|2162
5NDJ|1|1G|U|2163
*
5NDJ|1|Y4|A|31
5NDJ|1|Y4|A|32
5NDJ|1|Y4|G|33

Current chains

Chain 1G

16S ribosomal RNA

Chain Y4

mRNA

Nearby chains

Chain 12

30S ribosomal protein S2