IL_5NDJ_276
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_276 not in the Motif Atlas
- Homologous match to IL_7RQB_050
- Geometric discrepancy: 0.0992
- The information below is about IL_7RQB_050
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.2
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 27
Unit IDs
5NDJ|1|1H|G|1359
5NDJ|1|1H|G|1360
5NDJ|1|1H|U|1361
5NDJ|1|1H|U|1362
*
5NDJ|1|1H|A|1652
5NDJ|1|1H|C|1653
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain F8
- 50S ribosomal protein L23
- Chain P8
- 50S ribosomal protein L34
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