IL_5NDJ_300
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UCAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_300 not in the Motif Atlas
- Homologous match to IL_7RQB_074
- Geometric discrepancy: 0.1339
- The information below is about IL_7RQB_074
- Detailed Annotation
- UAA/GAN with extra pair
- Broad Annotation
- No text annotation
- Motif group
- IL_90318.1
- Basepair signature
- cWW-tSH-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5NDJ|1|1H|U|1885
5NDJ|1|1H|C|1886
5NDJ|1|1H|A|1887
5NDJ|1|1H|A|1888
5NDJ|1|1H|G|1889
*
5NDJ|1|1H|C|1912
5NDJ|1|1H|G|1913
5NDJ|1|1H|A|1914
5NDJ|1|1H|A|1915
5NDJ|1|1H|G|1916
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain J8
- 50S ribosomal protein L28
- Chain V1
- Transfer RNA; tRNA
Coloring options: