IL_5NDJ_335
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- UGUAAG*UUGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_335 not in the Motif Atlas
- Homologous match to IL_7RQB_110
- Geometric discrepancy: 0.0651
- The information below is about IL_7RQB_110
- Detailed Annotation
- tHS double platform
- Broad Annotation
- No text annotation
- Motif group
- IL_83162.5
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NDJ|1|1H|U|2860
5NDJ|1|1H|G|2861
5NDJ|1|1H|U|2862
5NDJ|1|1H|A|2863
5NDJ|1|1H|A|2864
5NDJ|1|1H|G|2865
*
5NDJ|1|1H|U|2878
5NDJ|1|1H|U|2879
5NDJ|1|1H|G|2880
5NDJ|1|1H|A|2881
5NDJ|1|1H|G|2882
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 98
- 50S ribosomal protein L17
- Chain B8
- 50S ribosomal protein L19
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