IL_5NDJ_348
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CCAG*CUG
- Length
- 7 nucleotides
- Bulged bases
- 5NDJ|1|14|C|1043
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDJ_348 not in the Motif Atlas
- Geometric match to IL_4P3T_005
- Geometric discrepancy: 0.2916
- The information below is about IL_4P3T_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
5NDJ|1|14|C|1042
5NDJ|1|14|C|1043
5NDJ|1|14|A|1044
5NDJ|1|14|G|1045
*
5NDJ|1|14|C|1207
5NDJ|1|14|U|1208
5NDJ|1|14|G|1209
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L13
- Chain 85
- 50S ribosomal protein L20
- Chain 95
- 50S ribosomal protein L21
- Chain H5
- 50S ribosomal protein L30
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