IL_5NDK_009
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GACAACC*GGCUAAUC
- Length
- 15 nucleotides
- Bulged bases
- 5NDK|1|13|U|813
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_009 not in the Motif Atlas
- Homologous match to IL_6CZR_121
- Geometric discrepancy: 0.2008
- The information below is about IL_6CZR_121
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.5
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NDK|1|13|G|788
5NDK|1|13|A|789
5NDK|1|13|C|790
5NDK|1|13|A|791
5NDK|1|13|A|792
5NDK|1|13|C|793
5NDK|1|13|C|794
*
5NDK|1|13|G|807
5NDK|1|13|G|808
5NDK|1|13|C|809
5NDK|1|13|U|810
5NDK|1|13|A|811
5NDK|1|13|A|812
5NDK|1|13|U|813
5NDK|1|13|C|814
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain BI
- 30S ribosomal protein S20
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