IL_5NDK_012

3D structure

PDB id

5NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

5NDK|1|13|G|892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NDK_012 not in the Motif Atlas

Homologous match to IL_4LFB_012

Geometric discrepancy: 0.1077

The information below is about IL_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22002.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5NDK|1|13|U|890
5NDK|1|13|A|891
5NDK|1|13|G|892
5NDK|1|13|U|893
*
5NDK|1|13|A|915
5NDK|1|13|G|916

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 8I

30S ribosomal protein S17