IL_5NDK_085
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 5NDK|1|14|G|825, 5NDK|1|14|A|837, 5NDK|1|14|A|838, 5NDK|1|14|C|839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_085 not in the Motif Atlas
- Geometric match to IL_7RQB_023
- Geometric discrepancy: 0.0636
- The information below is about IL_7RQB_023
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.6
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NDK|1|14|G|824
5NDK|1|14|G|825
5NDK|1|14|A|826
*
5NDK|1|14|U|836
5NDK|1|14|A|837
5NDK|1|14|A|838
5NDK|1|14|C|839
5NDK|1|14|C|840
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L2
- Chain 39
- 50S ribosomal protein L4
- Chain A5
- 50S ribosomal protein L22
- Chain L5
- 50S ribosomal protein L34
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