IL_5NDK_092
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GCUAG*CAAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_092 not in the Motif Atlas
- Homologous match to IL_5J7L_274
- Geometric discrepancy: 0.2753
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5NDK|1|14|G|924
5NDK|1|14|C|925
5NDK|1|14|U|926
5NDK|1|14|A|927
5NDK|1|14|G|928
*
5NDK|1|14|C|946
5NDK|1|14|A|947
5NDK|1|14|A|948
5NDK|1|14|A|949
5NDK|1|14|C|950
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 45
- 50S ribosomal protein L16
- Chain D5
- 50S ribosomal protein L25
- Chain W4
- Transfer RNA; tRNA
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