IL_5NDK_102

3D structure

PDB id

5NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

5NDK|1|14|A|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDK|1|14|C|1091
5NDK|1|14|G|1092
5NDK|1|14|A|1093
5NDK|1|14|A|1094
5NDK|1|14|G|1095
5NDK|1|14|A|1096
5NDK|1|14|C|1097
5NDK|1|14|A|1098
5NDK|1|14|G|1099
5NDK|1|14|C|1100
*
5NDK|1|14|G|1155
5NDK|1|14|U|1156
5NDK|1|14|C|1157
5NDK|1|14|G|1158
5NDK|1|14|A|1159
5NDK|1|14|G|1160

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 59

50S ribosomal protein L6