IL_5NDK_166

3D structure

PDB id

5NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CACGGCGUCAAGCCGGUAAG*CGAGG

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDK|1|14|C|2805
5NDK|1|14|A|2806
5NDK|1|14|C|2807
5NDK|1|14|G|2808
5NDK|1|14|G|2809
5NDK|1|14|C|2810
5NDK|1|14|G|2811
5NDK|1|14|U|2812
5NDK|1|14|C|2813
5NDK|1|14|A|2814
5NDK|1|14|A|2815
5NDK|1|14|G|2816
5NDK|1|14|C|2817
5NDK|1|14|C|2818
5NDK|1|14|G|2819
5NDK|1|14|G|2820
5NDK|1|14|U|2821
5NDK|1|14|A|2822
5NDK|1|14|A|2823
5NDK|1|14|G|2824
*
5NDK|1|14|C|2902
5NDK|1|14|G|2903
5NDK|1|14|A|2904
5NDK|1|14|G|2905
5NDK|1|14|G|2906

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3

Chain A5

50S ribosomal protein L22