IL_5NDK_174
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_174 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.0512
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5NDK|1|16|C|73
5NDK|1|16|G|74
5NDK|1|16|A|75
5NDK|1|16|U|76
5NDK|1|16|G|77
5NDK|1|16|G|78
5NDK|1|16|U|79
5NDK|1|16|A|80
5NDK|1|16|C|81
*
5NDK|1|16|G|100
5NDK|1|16|G|101
5NDK|1|16|A|102
5NDK|1|16|G|103
5NDK|1|16|A|104
5NDK|1|16|G|105
5NDK|1|16|U|106
5NDK|1|16|A|107
5NDK|1|16|G|108
Current chains
- Chain 16
- 5S ribosomal RNA
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 88
- 50S ribosomal protein L16
- Chain H8
- 50S ribosomal protein L25
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