IL_5NDK_191
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGAAGAAG*UGUAAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_191 not in the Motif Atlas
- Homologous match to IL_4LFB_017
- Geometric discrepancy: 0.1399
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDK|1|1G|G|1050
5NDK|1|1G|G|1051
5NDK|1|1G|A|1052
5NDK|1|1G|A|1053
5NDK|1|1G|G|1054
5NDK|1|1G|A|1055
5NDK|1|1G|A|1056
5NDK|1|1G|G|1057
*
5NDK|1|1G|U|1068
5NDK|1|1G|G|1069
5NDK|1|1G|U|1070
5NDK|1|1G|A|1071
5NDK|1|1G|A|1072
5NDK|1|1G|A|1073
5NDK|1|1G|C|1074
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 32
- 30S ribosomal protein S4
Coloring options: