IL_5NDK_279
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NDK_279 not in the Motif Atlas
- Homologous match to IL_7RQB_049
- Geometric discrepancy: 0.0422
- The information below is about IL_7RQB_049
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5NDK|1|1H|A|1311
5NDK|1|1H|U|1312
5NDK|1|1H|G|1313
5NDK|1|1H|A|1314
5NDK|1|1H|G|1315
5NDK|1|1H|U|1316
5NDK|1|1H|A|1317
5NDK|1|1H|A|1318
*
5NDK|1|1H|U|2036
5NDK|1|1H|G|2037
5NDK|1|1H|A|2038
5NDK|1|1H|A|2039
5NDK|1|1H|A|2040
5NDK|1|1H|U|2041
5NDK|1|1H|U|2042
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 31
- 50S ribosomal protein L4
- Chain 98
- 50S ribosomal protein L17
- Chain E8
- 50S ribosomal protein L22
- Chain N8
- 50S ribosomal protein L32
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